PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539451.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 281aa    MW: 30551.9 Da    PI: 5.1935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539451.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09100147455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  KN539451.1_FGP011 100 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 147
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.48E-1094151No hitNo description
SuperFamilySSF474591.27E-1694161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1696159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.30196146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6100147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDGGRVGGDY ISSLLSSSPR LDFGVPVGEE KESDGKRCKT GNGEKESSVK PKAEQAGSDS  60
SVEDGGGGGQ KQGKGKNAKP VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKVLQ  120
DLVPGCNKVI GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSNLPT LLQKDMFQAC  180
GPSASSVFSL ESSNSAFPFA EQGDVFQQFA QNSMESQCTL NQLDLALSQA TNAAQYAFQD  240
GTAGANLQQR NFWEDDLQSV FHIENGQSQE NGVSAPNFHG W
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539451.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992910.0AK099291.1 Oryza sativa Japonica Group cDNA clone:J023127C06, full insert sequence.
GenBankHQ8588690.0HQ858869.1 Oryza sativa Japonica Group isolate UT1678 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648582.10.0transcription factor BHLH094-like
SwissprotQ9CAA92e-52BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A0E0AXV50.0A0A0E0AXV5_9ORYZ; Uncharacterized protein
STRINGOGLUM08G22300.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]