PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539452.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 671aa    MW: 71877.7 Da    PI: 5.8826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539452.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12175220555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR++i +++  L+el+P++      K +Ka++L + ++Y+k Lq
  KN539452.1_FGP006 175 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 220
                        99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.24E-13168224No hitNo description
SuperFamilySSF474595.5E-17168231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.06170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-17172230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9175220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MPLTDGAAPV ICSSSSNDSS SGSEHSAAMP AGGGFLVGGV LPSMAAGEET PQSFGFGSLF  60
NGDLLQEANG SKYHHQQQQQ QLGVVPSSQP HHLNEFSSGL HHLNLSSLIS GPLASFNATQ  120
SHRQPAEACS GKNDGAAPFV NLSEVLPKGN GSGSAGNGAP KPRVRARRGQ ATDPHSIAER  180
LRREKISDRM KDLQELVPNS NKTNKASMLD EIIDYVKFLQ LQVKVLSMSR LGAAEAVVPL  240
LTETQTESPG FLLSPRSSSG ERQAGAGVVT GGLPGDQPEL LDGGAMFEQE VVKLMEDNMT  300
TAMQYLQSKG LCLMPVALAS AISAQKGTSS AAVRPEKKKN GDGDGGGDEE DVKGEFDAPR  360
RPPVGRPKEM RKLLYGGLVP SWIEKLLELR SEIDDCLVLP RQQPRPELGG VDVAEAILGD  420
PAAVTLLVES SSSSRREKFQ RDFLFIYFWI LGSAADAVEY RSGGARRSKL FSGCAGVAEG  480
GAARRGGMDT MRGALERARM LVGMEVDEES APEEQSFFDD VTRNCALTTT QASSIPTPPT  540
QPGSIRVPRS DLRLYGFAIC LAAGLTCTFL SMLVFFNPVK FGVTFTLGNL MALGRWGFNL  600
LNYVYINVNL YFNFAMVHSK LLTLLAIILE FGALVWLLLD FPASQVLPEC NFGIYLVWLS  660
STRQTLSVGG N
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539452.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419240.0AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623831.10.0transcription factor bHLH68
TrEMBLA0A0D3F6J30.0A0A0D3F6J3_9ORYZ; Uncharacterized protein
STRINGONIVA02G23040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.15e-54LJRHL1-like 3