PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539458.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 201aa    MW: 23971.6 Da    PI: 10.8072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539458.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-16958148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                       r+rW +eEd +l+ +v+q+G++ W++++++m+  ++R +k+c +rw +yl
  KN539458.1_FGP005  9 RQRWRPEEDAILLAYVRQYGPREWSLVSQRMNrpLHRDAKSCLERWKNYL 58
                       89**********************************************97 PP
2Myb_DNA-binding32.81.6e-1064100139
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                        +g+ T +E+ l +++ +++G++ Wk+Ia++++ gRt+k 
  KN539458.1_FGP005  64 KGSLTDDEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKR 100
                        57789*****************.*********.***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.191162IPR017930Myb domain
SMARTSM007171.7E-13860IPR001005SANT/Myb domain
SuperFamilySSF466891.21E-21998IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-201165IPR009057Homeodomain-like
CDDcd001678.00E-81158No hitNo description
PfamPF139212.5E-141273No hitNo description
PROSITE profilePS5129411.8663121IPR017930Myb domain
SMARTSM007172.3E-563111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-146699IPR009057Homeodomain-like
CDDcd001679.91E-56899No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MQPPPMRERQ RWRPEEDAIL LAYVRQYGPR EWSLVSQRMN RPLHRDAKSC LERWKNYLRP  60
GIKKGSLTDD EQRLVIRLQA KHGNKWKKIA AEVPGRTAKR LGKWEMEEGQ RAWAAHRKEA  120
AWRMKRVEMQ LETERACRRR EAAEEFEAKM RALREEQAAA VERVEAEYRE KMAGLRRDAE  180
AKEQKMAEQW AAKHARLAKN M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-161297789MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-161297789C-Myb DNA-Binding Domain
1msf_C5e-161297789C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539458.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0645191e-167AB064519.1 Oryza sativa Japonica Group OsRS2 mRNA for transcription factor rough sheath 2 like protein, complete cds.
GenBankAB0716001e-167AB071600.1 Oryza sativa Japonica Group gene for transcription factor OsRS2, complete cds, cultivar:Nipponbare.
GenBankAL7724251e-167AL772425.7 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-167AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620377.12e-69protein rough sheath 2 homolog
SwissprotQ94IB11e-70RS2_ORYSJ; Protein rough sheath 2 homolog
TrEMBLA0A151SW095e-73A0A151SW09_CAJCA; Transcription factor AS1
STRINGOGLUM12G18010.13e-69(Oryza glumipatula)
STRINGONIVA02G22170.13e-69(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.11e-57MYB family protein