PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539461.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 591aa    MW: 64762.7 Da    PI: 10.0737
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539461.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.36.8e-41180256278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        CqvegC++dls+a+eyhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+
  KN539461.1_FGP006 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 256
                        **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.0E-33172241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.496177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-38179259IPR004333Transcription factor, SBP-box
PfamPF031102.3E-31180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MASFGMNWNQ KSPVFWDWEN PAPFGPNTME NPKSIPHPEP RGVVVAAANH GSTNSSGGTF  60
TSSSELANGS SKSSLSASFD SSSKLGSSLE FRFASVKGHG KNMCKDGEAG RVEDSGTSPA  120
VAVSHGEPVI GLKLGKRTYF ENVCGGQNVK GSSTASGVTC PSTVVKKMKV SQQSTQSSYC  180
QVEGCKVDLS SAREYHRKHK VCEAHSKAPK VIVSGLERRF CQQCSRFHGL AEFDQKKKSC  240
RRRLSDHNAR RRKPQQEAIS FGSSRLATMF YDARQQTDIY FGQSPFGQVR SNAISSYDNL  300
GGFKFTEAKL PWMKPMKTIG LEDLNFSTLQ MPGNVVSHTV HHHDFDGLIP FKGNTTKVLN  360
QGVDPACAVV SSNSNGAPDL RRALSLLSSD SWGPADVQAG SQRRVHVQEH PVRVLLAHRP  420
PPVALPLPRP DAINKMDLLQ SLTITCAAGE KRGFNLSYLN VNKNLRKLKL GGPYLYLWGS  480
KLPVEGEKLT CTNGYHKLKK LSIIAMVKLN ECTFGTKNMA NLEVLVFAKC PRLSSPPPKL  540
DELNFLREVH LAQMPQGFYD GMNPATKKLV HFPEFQHHFH SSTRSVVQGG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271802531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235252KKKSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539461.1_FGP006
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731790.0AK073179.1 Oryza sativa Japonica Group cDNA clone:J033004F21, full insert sequence.
GenBankAK1021360.0AK102136.1 Oryza sativa Japonica Group cDNA clone:J033085H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643448.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643450.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643451.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643452.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643454.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643455.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643456.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643457.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643458.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643459.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643461.10.0squamosa promoter-binding-like protein 12
RefseqXP_025882366.10.0squamosa promoter-binding-like protein 12
RefseqXP_025882367.10.0squamosa promoter-binding-like protein 12
SwissprotA2YGR50.0SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLI1Q5100.0I1Q510_ORYGL; Uncharacterized protein
STRINGORGLA06G0222300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-50squamosa promoter binding protein-like 2