PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539462.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 334aa    MW: 36265.3 Da    PI: 6.4367
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539462.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.2e-16204255155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  KN539462.1_FGP004 204 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 255
                        89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.41488169IPR001471AP2/ERF domain
SMARTSM003809.4E-4127175IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-7138171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-7140170IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-18204265IPR016177DNA-binding domain
PfamPF008471.1E-10204255IPR001471AP2/ERF domain
CDDcd000182.92E-25204265No hitNo description
PROSITE profilePS5103219.467205263IPR001471AP2/ERF domain
SMARTSM003808.1E-34205269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-19205264IPR001471AP2/ERF domain
PRINTSPR003679.4E-5206217IPR001471AP2/ERF domain
PRINTSPR003679.4E-5245265IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MASANNWLGF SLSGQENPQP HQDSSPPAAI DISGAGDFYG LPTSQPTAAD AHLGVAGHHH  60
NASYGIMEAF NRGAQEAQGI DGQGDMRLIS GIIAVEEKGR VARVGKFILV CMQTPSVFFS  120
LYLTILVTAQ SLYLYHDYSG GYDKEDKAAR AYDLAALKYW GTTTTTNFPI SNYEKELDEM  180
KHMTRQEYIA YLRRNSSGFS RGASKYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTEE  240
EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILESSTLPG HSSTATNQGS TCSYGNEEQG  300
KLIGYDAMAM ASGAAGGGYQ LSQGSASTVL LDWV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539462.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120701e-161AK112070.1 Oryza sativa Japonica Group cDNA clone:001-120-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623974.16e-93AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A446VHA71e-102A0A446VHA7_TRITD; Uncharacterized protein
STRINGOB02G31260.13e-94(Oryza brachyantha)
STRINGOPUNC02G21890.12e-92(Oryza punctata)
STRINGOBART04G17940.17e-97(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.15e-82AP2 family protein