PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539469.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 114aa    MW: 12440.8 Da    PI: 8.5163
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539469.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP76.25.2e-243077148
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48
                       +Cq+egC+adls ak+yhrrhkvCe h+ka+vv +sg++qrfCqqCs 
  KN539469.1_FGP004 30 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVSASGKQQRFCQQCSS 77
                       6*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-252376IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.54628105IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-232977IPR004333Transcription factor, SBP-box
PfamPF031104.5E-193177IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MLAVDRLLMR SRLGGVFGLG FGGAHHQPPR CQAEGCKADL SGAKHYHRRH KVCEYHAKAS  60
VVSASGKQQR FCQQCSSALP STATNGEVSD QNNDNSHNNG GNNNNMHLFE VDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-1431761156squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539469.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057601e-120AP005760.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1047G05.
GenBankAP0149621e-120AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-120CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146777.18e-42squamosa promoter-binding-like protein 10
SwissprotA2YFT92e-37SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE82e-37SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLB9FQB83e-46B9FQB8_ORYSJ; Uncharacterized protein
STRINGPavir.Da00293.1.p3e-46(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.25e-25squamosa promoter binding protein-like 8