PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539473.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 978aa    MW: 108699 Da    PI: 5.837
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539473.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15.2e-21106207199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+    
  KN539473.1_FGP002 106 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV-- 193
                        99*****************************954.4444.49**********************************************99.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  KN539473.1_FGP002 194 RDEKHQLLLGIRRA 207
                        55788889999997 PP
2Auxin_resp99.54.6e-33232309177
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnS 77 
                        aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpv W +S
  KN539473.1_FGP002 232 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVGWDES 309
                        79*********************************989*************************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.09E-4195235IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-3998221IPR015300DNA-binding pseudobarrel domain
CDDcd100177.31E-18105206No hitNo description
PROSITE profilePS5086310.912106208IPR003340B3 DNA binding domain
PfamPF023629.2E-19106207IPR003340B3 DNA binding domain
SMARTSM010196.7E-21106208IPR003340B3 DNA binding domain
PfamPF065077.5E-28232309IPR010525Auxin response factor
PfamPF023093.0E-9842930IPR033389AUX/IAA domain
PROSITE profilePS5174529.258845929IPR000270PB1 domain
SuperFamilySSF542773.14E-7863924No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 978 aa     Download sequence    Send to blast
MVYKSNIILR NAFSMLLETT EYLLNLSFLF QVAASMQKDV DAHVPSYPNL PSKLICLLHG  60
VNLHADPDTD EVYAQMTLQP VNTYGKEALQ LSELALKQAR PQMEFFCKTL TASDTSTHGG  120
FSVPRRAAEK IFPPLDFSMQ PPAQELQARD IHDNVWTFRH IYRGQPKRHL LTTGWSLFVS  180
GKRLFAGDSV IVVRDEKHQL LLGIRRANRQ PTNISSSVLS SDSMHIGVLA AAAHAAANSS  240
PFTIFYNPRA SPTEFVIPFA KYQKALYSNQ ISLGMRFRMM FETEELGTRR YMGTITGISD  300
LDPVGWDESA AGERRNRVSI WEIEPVAAPF FLCPQPFFGV KRPRQLDDES EMENLFKRAM  360
PWLGEEVCIK DTQNQNSTAP GLSLVQWMNM NRQQSSSLAN TAAQSEYLQA LGNPAMQNLA  420
ADELARQLYV QNNLLQQNCI QFNSPKLPQQ MQTMNDLSKA AIPLNQLGAI INPQDQKQDA  480
VNHQRQQNSI QVIPLSQAQS NLVQAQPPLI QEQQKLIMDM QKQLSNSHSL AQQQMMPQQE  540
IKPSLQATPL LPTVQQEQQQ KLLQKQVSLA DVSGVAFQPI SSTNVIPKPG GAMIISGATQ  600
SVVTEEMPSC STSPSTANGN HLTQSTKNRH CINTERLPPS TAPMLIPTSI DAVTATPLMT  660
KELPKPNNNV KQSVVNSKLP NVAPGPQNCM NNALQTDNLE TSSSATSLCP SRTDGLAHQG  720
FPSSNFNQHQ MFKDALPDVE IEGVDPSNSG LFGINNDNPL GFPIETEDLL INALDSVKYQ  780
NHISTDVENN YPMQKDALQE ISTSMVSQSF GQSDMAFNSI DSAINDGAFL NKNSWPAAPP  840
LQRMRTFTKV YKRGAVGRSI DIGRYSGYEE LKHALARMFG IEGQLEDRQR IGWKLVYKDH  900
EDDILLLGDD PWEEFVNCVR CIRILSPQEV QQMSLDGDLG SNVLPNQACS SSDGVNGWRP  960
RCDQNPGNPS ISPYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1323132483388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539473.1_FGP002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052940.0AP005294.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1679_B08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403032.10.0PREDICTED: auxin response factor 19-like isoform X2
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0D9VC450.0A0A0D9VC45_9ORYZ; Auxin response factor
STRINGOMERI02G04130.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-178auxin response factor 19