PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539480.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 382aa    MW: 42474.7 Da    PI: 7.9496
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539480.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.4e-192763621199
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++  l lp+kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g f+vF++dg   f  +v+vf++
  KN539480.1_FGP012 276 SSKTKLKLPNKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAF--TVTVFDE 362
                        455669**********999999999***************77999999**************************998888..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.101.6E-2324123IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.18E-4025223IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003644404362No hitNo description
SMARTSM00369144566IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514507.9584566IPR001611Leucine-rich repeat
PROSITE profilePS514505.2636889IPR001611Leucine-rich repeat
SMARTSM0036412089108No hitNo description
SMARTSM003690.8289111IPR003591Leucine-rich repeat, typical subtype
PfamPF138552.8E-890148IPR001611Leucine-rich repeat
PROSITE profilePS514507.21191112IPR001611Leucine-rich repeat
SMARTSM0036420112131No hitNo description
SMARTSM003699.9112134IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.349114135IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.102.5E-23124230IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0036444135154No hitNo description
SMARTSM003697.9135158IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036452158177No hitNo description
PROSITE profilePS514506.249160181IPR001611Leucine-rich repeat
SMARTSM00364230181200No hitNo description
SMARTSM003690.016181204IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.534183204IPR001611Leucine-rich repeat
SuperFamilySSF1019365.69E-19266369IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-21266361No hitNo description
PROSITE profilePS5086314.226266363IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-21267365IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-15268363IPR003340B3 DNA binding domain
PfamPF023627.7E-16276362IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGCCSSRSAD SPASRVTRWR STGIVALRDA RLKVVPNEVL QVGNSLRILD LTNNKIAEIP  60
QEVGTLVNMQ RLVLAGNLVE SIPANIGYLR NLKILTLDRN RISVLPEELG SLSNLQQLSI  120
SQNSLSRLPK SVGDLRNMLL LNVSDNKLIA LPESIGGCSS LEELQANGNS IEDVPSSICN  180
LVCLKSLSLN GNKIRQLPQN LLKDCKALQN ISLHDNPISM DQFQQVSGMK LNTDSSLAHS  240
ACCPDLLQIL AQIMEDQMAN LRLTDFEFFR IILPGSSKTK LKLPNKFARE LGDRELREAR  300
LRVAGEGRRP WDVKVFDDDV SGDVYLGRGW QEFARAHDLR DGHFLVFRYD GAAAFTVTVF  360
DETMCRRDYR RHHDAAGGVI LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4u06_A3e-281423516325LIC10831
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtLeucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539480.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345210.0CT834521.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN128K08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628623.11e-156plant intracellular Ras-group-related LRR protein 7 isoform X2
SwissprotB9F6551e-157PIRL7_ORYSJ; Plant intracellular Ras-group-related LRR protein 7
TrEMBLA0A0D9Z3U40.0A0A0D9Z3U4_9ORYZ; Uncharacterized protein
STRINGOGLUM03G08230.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1123044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.14e-14B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. You C, et al.
    Molecular characterization, expression pattern, and functional analysis of the OsIRL gene family encoding intracellular Ras-group-related LRR proteins in rice.
    Plant Mol. Biol., 2010. 74(6): p. 617-29
    [PMID:20949308]