PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539488.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 82aa MW: 9968.54 Da PI: 9.1627

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539488.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	33	50	1	17
EEET.TTTEEESSHHHHH CS zf-C2H2 1 ykCp.dCgksFsrksnLk 17 ++C +Cg++F + +L+ KN539488.1_FGP002 33 FVCDiYCGRVFIQEQMLV 50 89*********9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00565	2.1E-10	2	63	IPR016071	Staphylococcal nuclease (SNase-like), OB-fold
Gene3D	G3DSA:2.40.50.90	1.7E-13	2	55	IPR016071	Staphylococcal nuclease (SNase-like), OB-fold
SuperFamily	SSF50199	4.45E-13	3	63	IPR016071	Staphylococcal nuclease (SNase-like), OB-fold

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MQYGKESQDA LVKLIARKCV TLHVYGQDQF ERFVCDIYCG RVFIQEQMLV NGHAWHFKTY 60 DKRRQFAIVR NYALFKHYFQ LE

Functional Description ? help Back to Top
Source	Description
UniProt	Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539488.1_FGP002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620732.1	7e-40	probable staphylococcal-like nuclease CAN4 isoform X1
Refseq	XP_015620733.1	4e-40	probable staphylococcal-like nuclease CAN4 isoform X2
Refseq	XP_015620734.1	4e-40	probable staphylococcal-like nuclease CAN4 isoform X3
Swissprot	Q2QUS0	6e-41	CAN4_ORYSJ; Probable staphylococcal-like nuclease CAN4
TrEMBL	A0A0E0ML25	1e-37	A0A0E0ML25_ORYPU; Uncharacterized protein
STRING	OS12T0255200-01	3e-39	(Oryza sativa)
STRING	OPUNC12G06910.1	2e-38	(Oryza punctata)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]