PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539494.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 115aa    MW: 12454.2 Da    PI: 10.5626
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539494.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind73.54e-231674260
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
       HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                       F+ k+y+++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+Y
  KN539494.1_FGP009 16 FVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTY 74
                       9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.0E-261279IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-2112109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-221574IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-181674IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-131639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-135466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-136779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MAAVAAGGGG GGAAPFVWKT YRMVEDPGTD GVIGWGKGNN SFVVADPFVF SQTLLPAHFK  60
HNNFSSFVRQ LNTYVSLVTP SSISSSHHTP PLSALHIMLP WILSGTQLKT WRDRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-171374162Putative transcription factor
5d5x_B2e-171374162Putative transcription factor
5d5x_E2e-171374162Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539494.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2412541e-165AK241254.1 Oryza sativa Japonica Group cDNA, clone: J065130H10, full insert sequence.
GenBankAP0036821e-165AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149621e-165AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965592.12e-39heat stress transcription factor C-2b
SwissprotQ0DBL61e-38HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A0E0AAT19e-63A0A0E0AAT1_9ORYZ; Uncharacterized protein
STRINGOGLUM06G19290.11e-63(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-25heat shock transcription factor C1