PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539499.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 251aa    MW: 28100.6 Da    PI: 5.538
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539499.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.21.6e-36121431128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        +ppGf+F+Ptde+lvv+yL+++++++++ +   i+++diy+v+Pw+Lp +++++++++ yfF+ +++++    +++r+t sg+Wk tg++k+
  KN539499.1_FGP004  12 MPPGFQFQPTDEQLVVDYLQRRTAAQPCVT-PDITDIDIYNVDPWQLPaMAMYGSDHDRYFFTMAAREA----QARRTTPSGFWKPTGTKKT 98 
                        79*************************988.55***************778888999*******99875....7899*************** PP

                NAM  92 vlsk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                        +++    ++  + +k+ +vfy      +g+ ++ +kt+W+mheyrl
  KN539499.1_FGP004  99 IFVVaggHEVPTAVKRRFVFYlghhqpSGN-NNNNKTSWIMHEYRL 143
                        *99976666669*********655543333.3346*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-424175IPR003441NAC domain
PROSITE profilePS5100540.73412175IPR003441NAC domain
PfamPF023657.2E-2213143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAMTPQLAFS RMPPGFQFQP TDEQLVVDYL QRRTAAQPCV TPDITDIDIY NVDPWQLPAM  60
AMYGSDHDRY FFTMAAREAQ ARRTTPSGFW KPTGTKKTIF VVAGGHEVPT AVKRRFVFYL  120
GHHQPSGNNN NNKTSWIMHE YRLMNPPRAA VPSSSSVNRL PYLTEEMVLC RISNKDLPKP  180
PFIHNGLLQF SSVGLNGDGY NYLILDHLEP PAMEYPNVGI GNIVDDAAAG TDDPGDLDEE  240
IDDSMQRNHG G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-291217517165NO APICAL MERISTEM PROTEIN
1ut4_B4e-291217517165NO APICAL MERISTEM PROTEIN
1ut7_A4e-291217517165NO APICAL MERISTEM PROTEIN
1ut7_B4e-291217517165NO APICAL MERISTEM PROTEIN
3swm_A4e-291217520168NAC domain-containing protein 19
3swm_B4e-291217520168NAC domain-containing protein 19
3swm_C4e-291217520168NAC domain-containing protein 19
3swm_D4e-291217520168NAC domain-containing protein 19
3swp_A4e-291217520168NAC domain-containing protein 19
3swp_B4e-291217520168NAC domain-containing protein 19
3swp_C4e-291217520168NAC domain-containing protein 19
3swp_D4e-291217520168NAC domain-containing protein 19
4dul_A4e-291217517165NAC domain-containing protein 19
4dul_B4e-291217517165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539499.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072830.0AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence.
GenBankEF1224790.0EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625739.10.0NAC domain-containing protein 48-like
TrEMBLA0A0E0NBM61e-180A0A0E0NBM6_ORYRU; Uncharacterized protein
TrEMBLQ6H8A91e-180Q6H8A9_ORYSJ; NAC6
STRINGORUFI02G08550.10.0(Oryza rufipogon)
STRINGOS02T0214500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165401213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-33NAC domain containing protein 32