PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539511.1_FGP007

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 59aa MW: 6265.03 Da PI: 6.5102

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539511.1_FGP007	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	39.7	1.4e-12	1	43	58	100
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m+s+++ A+ara dPv+Ga+gvi++lqq+l+++kae+a+++++ KN539511.1_FGP007 1 MASVAFVADARAADPVHGAYGVIRNLQQELASVKAEIAAIRQK 43 79************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.2E-8	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 59 aa Download sequence Send to blast
MASVAFVADA RAADPVHGAY GVIRNLQQEL ASVKAEIAAI RQKQQQQAQQ APPALEDGH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539511.1_FGP007

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	1e-72	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878934.1	1e-21	LOB domain-containing protein 22-like
TrEMBL	A0A0E0C3S1	2e-18	A0A0E0C3S1_9ORYZ; Uncharacterized protein
STRING	OMERI01G17780.1	4e-19	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15375	11	18