PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539526.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 395aa    MW: 42855.1 Da    PI: 4.6206
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539526.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.22.2e-2191332128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          GfrF+P++ee++++yL + ++g++ + +e  i+++d+y + eP+dL  k    +++++ + +fF+  ++ +    + +r++  g+W ++ 
  KN539526.1_FGP010   9 KLGFRFNPSQEEVITYYLPRLIAGHPPKNTEGyIHRADVYGAdEPRDLAgKyapVARSSNGDRFFFTGCRRMKG---KFSRSAGGGTWVSQS 97 
                        67************************6665555*******9869****843554334455588****9999764...7999999*****886 PP

                NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + k++++++g ++g  k + f     ++g++tdW+m+ey+l
  KN539526.1_FGP010  98 S-KDLKNREGIKIGEVKNFRFK----KDGKNTDWLMEEYHL 133
                        6.888888*************7....78899********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-238152IPR003441NAC domain
PROSITE profilePS5100525.4128152IPR003441NAC domain
PfamPF023659.6E-1511133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MASLDLLLKL GFRFNPSQEE VITYYLPRLI AGHPPKNTEG YIHRADVYGA DEPRDLAGKY  60
APVARSSNGD RFFFTGCRRM KGKFSRSAGG GTWVSQSSKD LKNREGIKIG EVKNFRFKKD  120
GKNTDWLMEE YHLCGQESGD VVEPVVCRIY VSPRAAPDSV AHQESAVLQP REPAPLPVPA  180
APAPPRQVPV VTQQAPPPPR PLAPSSVTAS AAPPRCAVAP SQHHPPFQTY PTDPFEPPAP  240
AASVTQPSVP ATPEQGPAYV PDPADIGMEM EELMSFLDST PVDAILPSQL YEYDELAKEL  300
EDALQGGGEE DGNDNPPRCA TPPPPPRPAS WPAMAPPPPH PPIPTFPKDP FETNEEEDEG  360
EDDFASMLRG HVFAPSVVAE EVDVTSSRRG ATVCF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539526.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619212.10.0vegetative cell wall protein gp1
TrEMBLB9GCV10.0B9GCV1_ORYSJ; Uncharacterized protein
STRINGOGLUM12G11100.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-13NAC domain containing protein 52