PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539529.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 550aa    MW: 59007.3 Da    PI: 6.3519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539529.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-051633219
                       EETTTTEEESSHHHHHHH CS
            zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                       +C++Cgk F+++ +L  H
  KN539529.1_FGP006 16 TCENCGKEFTSWKTLLDH 33
                       6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552001535IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6211542IPR007087Zinc finger, C2H2
SuperFamilySSF576678.09E-8192215No hitNo description
SMARTSM003550.13193215IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221193220IPR007087Zinc finger, C2H2
PfamPF139124.4E-9193217IPR007087Zinc finger, C2H2
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
SuperFamilySSF576678.09E-8300327No hitNo description
PfamPF139121.7E-12304328IPR007087Zinc finger, C2H2
SMARTSM003550.46305327IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349305327IPR007087Zinc finger, C2H2
PROSITE patternPS000280307327IPR007087Zinc finger, C2H2
PfamPF139120.018455468IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MYALRTNPGR PRNCRTCENC GKEFTSWKTL LDHGRCGLDE EDGRLDVSLR SPPLHDGGDE  60
NDGEDEEEGD DLTLAAGGWS KGKRSRRAKV MAIGTGSVSE LQLPAPSTEE EDLANFLVML  120
SSSSSSSSRV AQPAIVVDDA DQESCASGSK DEERNRFLVP QPISMAAPLM AQMTVIAPQV  180
VPQHISTVPR GMFECKACKK VFTSHQALGG HRASHKKVKG CFAAKLESSR NETSQTQTQQ  240
QHVTAAPHDN TRATTSHVIT SDISEIVLAG AASTDMAMMM SVEDFAPTPL APSAVSSFKK  300
KGKVHECSIC HRVFTSGQAL GGHKRCHWLT SGATDPLTKL QPVAQDHAMM AAMCHQLTLG  360
RPIFDPTDQR ILDLNVPTNP LAEAVAARQQ QQQQQVAALN DGALCLNAAA SVYLQSWTGH  420
SNGSHSAIVA DDADNSPAHP CLVATSDATG TRRATGQVLG GHKQCHWRTS SATDPLTKLQ  480
PVAQDHATVA AMCHQLMLGR PIFDPTDQQI LDLNVPTNPL AEVVEDRQQQ QVAALNNGVL  540
CLNEASAVYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539529.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075590.0AK107559.1 Oryza sativa Japonica Group cDNA clone:002-130-B07, full insert sequence.
GenBankAP0050720.0AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0052890.0AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624902.10.0uncharacterized protein LOC4330215
TrEMBLA0A0D3F8G60.0A0A0D3F8G6_9ORYZ; Uncharacterized protein
STRINGOBART02G26690.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.15e-20C2H2-like zinc finger protein