PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539536.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 220aa    MW: 24085.7 Da    PI: 7.568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539536.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11125172455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  KN539536.1_FGP004 125 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 172
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-16119181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.87E-11119176No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16121177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-9125172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGAAGVAEEE AQGGGGSGRP PRSRTTRPGS SPLPEEEAAV RICGTSHYVV LAADRQSLLW  60
YLYTDSEAKR FKASKSSGDN SSLRTEAETD SRNASKSGDQ NPPPPEPPKQ DYIHVRARRG  120
QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKASV LDEIINYIQA LQRQVEFGAQ  180
VYNTAPGLTF DPQTPREYAQ GSTPSEWLHM QIGGTYERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539536.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001770.0AK100177.1 Oryza sativa Japonica Group cDNA clone:J023029J10, full insert sequence.
GenBankHQ8588470.0HQ858847.1 Oryza sativa Japonica Group isolate UT1610 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629323.11e-99transcription factor BHLH089-like
SwissprotQ84T081e-100BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0D3FQB91e-104A0A0D3FQB9_9ORYZ; Uncharacterized protein
TrEMBLI1PGF21e-104I1PGF2_ORYGL; Uncharacterized protein
STRINGORGLA03G0344800.11e-105(Oryza glaberrima)
STRINGOBART03G37850.11e-105(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-51BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]