PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539543.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 113aa    MW: 12336 Da    PI: 8.3544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539543.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.81.6e-201560147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg+W++eEde l ++v+++G ++W++I r+++ gR++k+c++rw + 
  KN539543.1_FGP001 15 RGPWSPEEDEALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 60
                       89******************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5921065IPR017930Myb domain
SuperFamilySSF466891.65E-171064IPR009057Homeodomain-like
SMARTSM007172.2E-171463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-221564IPR009057Homeodomain-like
PfamPF002491.4E-191560IPR001005SANT/Myb domain
CDDcd001671.89E-171759No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MGGGGGVEAD CDRIRGPWSP EEDEALRRLV ERHGARNWTA IGREIPGRSG KSCRLRWCNQ  60
LSPQEMIRAE VHKYMASVGV RAGCGDAGGA DLHMPQLVEG VMRAAAERVG RMH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539543.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1058173e-96AK105817.1 Oryza sativa Japonica Group cDNA clone:001-203-C12, full insert sequence.
GenBankAK1215643e-96AK121564.1 Oryza sativa Japonica Group cDNA clone:J033034J16, full insert sequence.
GenBankAP0035733e-96AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01.
GenBankAP0149623e-96AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126143e-96CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankCT8339183e-96CT833918.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN042F17, full insert sequence.
GenBankCU4062983e-96CU406298.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110G10, full insert sequence.
GenBankCU4067773e-96CU406777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108L17, full insert sequence.
GenBankCU4069043e-96CU406904.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693651.12e-62PREDICTED: transcription factor MYB44-like
TrEMBLJ3MG432e-69J3MG43_ORYBR; Uncharacterized protein
STRINGOB06G29870.14e-70(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3063944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-28myb domain protein r1