PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539550.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 166aa MW: 17487.4 Da PI: 4.4143

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539550.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.4e-05	110	160	12	53
HHHHHHHHHHHHHCTSCCC............TTS-STCHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkas.........kapskKlsKaeiLekAveYIks 53 RR+ri +++ L++l+P+ + a+++K + ++ A + I s KN539550.1_FGP001 110 RRERISERLKVLQDLVPNGTkvlatdefwPAQGGKAPELSQVKDALDAILS 160 ******************555999999999999998888888888888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MAAQASSKRG MLLQREAVLY DDEPSMAPLE ILGYHGNGVG GGGCVDADYY YSWSGSSSSS 60 SSSVLSFDQA AVGGGGCARQ LAFHPGGDDD DCAMWMDAAA GAMVENTSVR RERISERLKV 120 LQDLVPNGTK VLATDEFWPA QGGKAPELSQ VKDALDAILS SQHPNK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539550.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	1e-169	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643698.1	6e-45	transcription factor bHLH83
TrEMBL	A0A0E0BVZ3	9e-46	A0A0E0BVZ3_9ORYZ; Uncharacterized protein
STRING	OMERI01G00280.1	1e-46	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	9e-24	ROOT HAIR DEFECTIVE6