PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539559.1_FGP011

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 91aa MW: 10189.5 Da PI: 9.2896

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539559.1_FGP011	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	125.8	6.2e-39	17	72	115	170
YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl KN539559.1_FGP011 17 DGDAPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 72 4568**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.9E-37	10	72	IPR006780	YABBY protein
SuperFamily	SSF47095	3.53E-8	20	66	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.5E-5	22	64	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MAACVAGERA EQQPVQDGDA PEKRQRVPSA YNRFIKDEIQ RIKAGNPDIS HREAFSAAAK 60 NWAHFPHIHF GLMSDHQGLK KTSLLPQVTN Q

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539559.1_FGP011

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274015	1e-107	AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464399.1	1e-42	protein YABBY 3
Refseq	XP_025876472.1	1e-42	protein YABBY 3 isoform X2
Swissprot	Q8L556	1e-43	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A0E0EZR2	3e-41	A0A0E0EZR2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0M9I8	3e-41	A0A0E0M9I8_ORYPU; Uncharacterized protein
TrEMBL	A0A287FEU6	7e-42	A0A287FEU6_HORVV; Uncharacterized protein
TrEMBL	B9G6J8	1e-41	B9G6J8_ORYSJ; Uncharacterized protein
TrEMBL	C5WWB5	3e-41	C5WWB5_SORBI; Uncharacterized protein
STRING	OMERI10G11930.1	5e-42	(Oryza meridionalis)
STRING	OPUNC10G13730.1	5e-42	(Oryza punctata)
STRING	Sb01g017560.1	4e-42	(Sorghum bicolor)
STRING	Traes_1DL_C5AF9D06A.1	4e-42	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	3e-38	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]