PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539575.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 237aa    MW: 25259 Da    PI: 4.5417
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539575.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.51.1e-071331613058
                        TT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY  30 agCpvkkkversaedpkvveitYegeHnh 58 
                        +gC+++k+v+r++ dp +++++Y g+H++
  KN539575.1_FGP002 133 EGCNATKQVQRADGDPLLFDVVYLGDHTC 161
                        58*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.3E-6122163IPR003657WRKY domain
SuperFamilySSF1182902.35E-7124163IPR003657WRKY domain
PfamPF031063.5E-7133161IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-7133163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVELCGGEGE GRIMLATELA QLRAMARELE AKMDPDRVAA RELCRALASS VDRSIRLAAS  60
CFPPPEHPPP AAGNAGRDAA FKKRQVMVPA MEGDGQGEEA GEGDVGAGHG VAGRRPELEE  120
VRPEGHSWRQ IPEGCNATKQ VQRADGDPLL FDVVYLGDHT CGQAAAAAAA QRAPPEHAGQ  180
EQQRQSSLLA AGAEGIHQQF SSDFSAGSVG VDMDHEARFE DLFSSTLEFF QSEIQNL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539575.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1042841e-139AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence.
GenBankAP0149611e-139AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638413.11e-103probable WRKY transcription factor 41
TrEMBLA0A0E0PRH11e-106A0A0E0PRH1_ORYRU; Uncharacterized protein
TrEMBLQ6IER21e-106Q6IER2_ORYSJ; WRKY transcription factor 19
STRINGORUFI05G28340.11e-107(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-09WRKY family protein