PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539577.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 147aa    MW: 16386.5 Da    PI: 9.6746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539577.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.8e-1478123655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  KN539577.1_FGP002  78 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 123
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.28172122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1775132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-1276127No hitNo description
Gene3DG3DSA:4.10.280.106.7E-1677135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1378128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-1178123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSSGWEDSSL MSETNISGVK RQRDSSEPSQ NGGGGLAHQF SLPKTSSEMA AIEKFLQFQD  60
AVPCKIRAKR GCATHPRSIA ERVRRTRISE RIRKLQELVP NMDKQTNTAD MLDLAVDYIK  120
DLQKQVKGLN DSRANCTCSA KHQQYSG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539577.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4658240.0AF465824.1 Oryza sativa transcription factor RAU1 (rau1) mRNA, partial cds.
GenBankAK1001060.0AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650699.13e-96transcription factor bHLH130
SwissprotQ66GR36e-59BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0E0ENA91e-98A0A0E0ENA9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0LWP79e-99A0A0E0LWP7_ORYPU; Uncharacterized protein
TrEMBLQ8S4907e-99Q8S490_ORYSA; Transcription factor RAU1 (Fragment)
STRINGOMERI08G16440.12e-99(Oryza meridionalis)
STRINGOPUNC08G18020.21e-99(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]