PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539589.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 219aa    MW: 23594.7 Da    PI: 9.7731
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539589.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.3e-1556100347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+  ++ +  +lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  KN539589.1_FGP002  56 PWTEEEHRMFLAGLDKLGKGDWRGISRHFVTTRTPTQVASHAQKY 100
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.64649105IPR017930Myb domain
SuperFamilySSF466891.94E-1850106IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1852103IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.8E-1253100IPR009057Homeodomain-like
SMARTSM007171.9E-1153103IPR001005SANT/Myb domain
PfamPF002496.0E-1256100IPR001005SANT/Myb domain
CDDcd001672.42E-1056101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MECLASPAYY GASASPSVSS SSSSLVSIEE NTERVSSGYL SDGLMGRGQE RKKGVPWTEE  60
EHRMFLAGLD KLGKGDWRGI SRHFVTTRTP TQVASHAQKY FLRRNSLTQK KRRSSLFDVV  120
EGSKRAAAMP ISGSASELQI PGMSIGVGAA KEEVVLPPCL NLMSNSSSAS QHSPSLTLLA  180
NPQVQLQMPD LELKMSTSRL SDQSGPSPST PFFGTIRVT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539589.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0614270.0AK061427.1 Oryza sativa Japonica Group cDNA clone:006-306-H01, full insert sequence.
GenBankAK0655940.0AK065594.1 Oryza sativa Japonica Group cDNA clone:J013029P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637665.11e-124transcription factor MYBS3-like
TrEMBLA0A0E0DN381e-132A0A0E0DN38_9ORYZ; Uncharacterized protein
STRINGOMERI05G05490.11e-133(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-39MYB_related family protein