PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539590.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 153aa MW: 17104.4 Da PI: 10.1927

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539590.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.2	4.8e-12	83	146	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 +fY++YA ++GF+++ks++ k r+ +C++egk++++ ++ +++r+r+++++gCka +k+++++ KN539590.1_FGP003 83 NFYQRYACHAGFDIKKSRTLKA-------FREVCCTREGKHASKVTD-GDRQRRRPSKKMGCKAYVKLRRRR 146 6************9998877.......7899******9999.99999*************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-7	83	146	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MSSCPPVTPR SSTGCAPASP PHQQCTPTRQ AGDSHSRWTP PCLDDNDIAT PTPNRVYSHG 60 PNVPPRMVPT EGMAFPTYDD AYNFYQRYAC HAGFDIKKSR TLKAFREVCC TREGKHASKV 120 TDGDRQRRRP SKKMGCKAYV KLRRRRHALI GGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	128	DRQRRR
2	126	145	RRRPSKKMGCKAYVKLRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539590.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	1e-115	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025882211.1	1e-36	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q6AU28	1e-78	Q6AU28_ORYSJ; Putative FAR1 protein
STRING	ORGLA03G0393200.1	1e-45	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	3e-10	FAR1-related sequence 6