PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539600.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 126aa    MW: 14351.7 Da    PI: 9.9909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539600.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-143075655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  KN539600.1_FGP005 30 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKELQ 75
                       689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2432474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-162780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-112879No hitNo description
Gene3DG3DSA:4.10.280.108.2E-152980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-103075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-123080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MAAIEKFLQF QDAVPCKIRA KRGCATHPRS IAERVRRTRI SERIRKLQEL VPNMEKQTNT  60
ADMLDLAVDY IKELQKQVKN CDLPNCPGIY RRCLDQVVTL QMRAGVLNDS RSSCTCSASK  120
QKHFAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539600.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209021e-127AK120902.1 Oryza sativa Japonica Group cDNA clone:J023030N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612612.15e-58transcription factor bHLH130
SwissprotQ66GR36e-44BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0E0ICG21e-58A0A0E0ICG2_ORYNI; Uncharacterized protein
TrEMBLA2Z2K21e-58A2Z2K2_ORYSI; Uncharacterized protein
STRINGONIVA08G17500.12e-59(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-35bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]