PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539607.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 169aa    MW: 19190.5 Da    PI: 6.2473
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539607.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.11.6e-1274123557
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                        ++ rr+ +NRe+ArrsR RK+++++eL   v eL   N++   el+    +++
  KN539607.1_FGP002  74 RKKRRLVSNRESARRSRVRKQKRLDELSSQVSELRDTNQRILVELN---HMIS 123
                        78899*********************************97765554...4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-969121No hitNo description
SMARTSM003383.0E-870134IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.88772135IPR004827Basic-leucine zipper domain
PfamPF001701.7E-974120IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.77E-1074125No hitNo description
CDDcd147026.77E-1375119No hitNo description
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MQHDAISNIA YHPSMDFTSF FLPQTDAYSH DLSALLDMAV VDPYISCNGS SITMIPVTED  60
EANAQPKNHG NDERKKRRLV SNRESARRSR VRKQKRLDEL SSQVSELRDT NQRILVELNH  120
MISKHARIVR ENSQLREEAS DLQRKLSEME MEDAEVAAAA AAPRTLEVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17394RKKRRLVSNRESARRSRVRKQK
28692RRSRVRK
38693RRSRVRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539607.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057850.0AP005785.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0453H10.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankBT1293470.0BT129347.1 Oryza sativa clone RRlibA00066 mRNA sequence.
GenBankBT1293890.0BT129389.1 Oryza sativa clone RRlibA00076 mRNA sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8353620.0CT835362.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI022L05, full insert sequence.
GenBankCT8353650.0CT835365.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025K13, full insert sequence.
GenBankCU4069130.0CU406913.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C002J11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624742.11e-104basic leucine zipper 43
TrEMBLA0A0D3F1V51e-118A0A0D3F1V5_9ORYZ; Uncharacterized protein
STRINGOBART02G06960.11e-119(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127422735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-22basic leucine-zipper 42