PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539620.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 251aa    MW: 27262.6 Da    PI: 4.6322
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539620.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.9e-13125173153
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                        s+++GV+ +k  g+W+A+I         +k+++lg ++t+ eAaka+++a+ k 
  KN539620.1_FGP002 125 SRFRGVTLHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAKAYDKAAIKC 173
                        789*******.7******77733....25**********77*********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.086490IPR001471AP2/ERF domain
SMARTSM003801.3E-45496IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-66091IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-86190IPR001471AP2/ERF domain
PfamPF008474.1E-9125175IPR001471AP2/ERF domain
CDDcd000183.02E-25125185No hitNo description
SuperFamilySSF541712.48E-17125184IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-17126184IPR001471AP2/ERF domain
SMARTSM003802.1E-32126189IPR001471AP2/ERF domain
PROSITE profilePS5103214.789126183IPR001471AP2/ERF domain
PRINTSPR003678.1E-6127138IPR001471AP2/ERF domain
PRINTSPR003678.1E-6165185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAATFYGVGS IALAMHEDDE EEGSGRVFGF AAGDLVRPAV VTQQLFPMTA AAAAAGLWEA  60
GGFDTAQAAA RAYDQAAIKF RGVEADINFT LDDYKVDIKK MNNFSKEEFV QVLRRQGAGF  120
VRGSSRFRGV TLHKCGKWEA RIGQLMGKKY VYLGLYDTEM EAAKAYDKAA IKCCGKEAVT  180
NFDTQAYEDE LNLHSWDSEL DLELSLGCSG GERSAGDPAA AVEVLHSAPS NQRTSLTWWS  240
YIDLPGITGP E
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539620.1_FGP002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429570.0AK242957.1 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence.
GenBankAY6851160.0AY685116.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D22 (AP2D22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.11e-138ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH01e-139AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A0E0E4531e-141A0A0E0E453_9ORYZ; Uncharacterized protein
STRINGOGLUM06G23380.11e-137(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-63AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]