PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539623.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 60aa MW: 6910.14 Da PI: 7.6174

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539623.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	57.7	4e-18	4	51	1	49
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 lppGfrFhPtdeel+ +yL++kv +++l++ +vi+ +d+ +++PwdLp+ KN539623.1_FGP002 4 LPPGFRFHPTDEELLLHYLRRKVMSRPLPA-DVIPVADLARLHPWDLPA 51 79**************************.99************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-21	2	53	IPR003441	NAC domain
PROSITE profile	PS51005	20.803	4	60	IPR003441	NAC domain
Pfam	PF02365	3.9E-10	5	56	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MPALPPGFRF HPTDEELLLH YLRRKVMSRP LPADVIPVAD LARLHPWDLP APFFCSTNVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-12	4	50	15	61	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539623.1_FGP002

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067450	6e-59	AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence.
GenBank	AK068446	6e-59	AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence.
GenBank	AK288942	6e-59	AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence.
GenBank	AP003262	6e-59	AP003262.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482D04.
GenBank	AP004223	6e-59	AP004223.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1033B05.
GenBank	AP004332	6e-59	AP004332.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16.
GenBank	AP014957	6e-59	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	6e-59	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBank	CT829591	6e-59	CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence.
GenBank	CT829592	6e-59	CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence.
GenBank	CU406744	6e-59	CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence.
GenBank	GU120351	6e-59	GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627804.1	5e-23	NAC domain-containing protein 83
Swissprot	O22798	3e-18	NAC41_ARATH; NAC domain-containing protein 41
Swissprot	Q9FY93	2e-18	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	Q8RUC7	6e-22	Q8RUC7_ORYSJ; p0482D04.6 protein
STRING	OMERI01G38920.1	1e-22	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22784	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	9e-21	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]