PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539640.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 177aa    MW: 19542.4 Da    PI: 9.6064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539640.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-092771554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       h+++Er RR+ri +++  L++l+P+       K + a++L +  +Y+k L
  KN539640.1_FGP004 27 HSIAERLRRERIAERMRALQDLVPNT-----NKTDRAAMLDEILDYVKFL 71
                       99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.92E-92076No hitNo description
SuperFamilySSF474591.83E-152081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.7962271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-152482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-62771IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-102877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAAPQPQQPP APRPKVRARR GQATDPHSIA ERLRRERIAE RMRALQDLVP NTNKTDRAAM  60
LDEILDYVKF LRLQVKVLSM SRLGGAGAVA QLVADIPISV KGEASDSGSK QQIWEKWSTD  120
GTEKQVAKLM EEDIGAAMQF LQSKALCMMP ISLAMAIYDT QHSQDGHSVK PEPNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13136RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539640.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666230.0AK066623.1 Oryza sativa Japonica Group cDNA clone:J013073L03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657507.21e-127PREDICTED: transcription factor UNE12-like
SwissprotO227683e-76UNE12_ARATH; Transcription factor UNE12
TrEMBLI1Q8K31e-126I1Q8K3_ORYGL; Uncharacterized protein
STRINGORGLA07G0044500.11e-126(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]