PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539646.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 154aa    MW: 16867.3 Da    PI: 11.3549
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539646.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.48e-231966249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       ri+nk +rqvtf+kRr g++KKA+EL  L++a vavi+fs+  ++y +
  KN539646.1_FGP004 19 RIDNKERRQVTFTKRRGGLFKKASELALLTGASVAVIVFSPAKHVYAF 66
                       8*********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.7771070IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-311069IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-261082IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-181232IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001266IPR002100Transcription factor, MADS-box
PfamPF003191.6E-231966IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-183247IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-184768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVHPLGRTSM GRQRIEIRRI DNKERRQVTF TKRRGGLFKK ASELALLTGA SVAVIVFSPA  60
KHVYAFGHPS VDAVLRSYAS VPREAAAGTD LAVRIGVMGG RWCEGAEQCD GRRLKDSDGN  120
SDAFPRDGQR GARNRTMILV AVAGERRYGR GVDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-171091184Myocyte-specific enhancer factor 2B
1tqe_Q1e-171091184Myocyte-specific enhancer factor 2B
1tqe_R1e-171091184Myocyte-specific enhancer factor 2B
1tqe_S1e-171091184Myocyte-specific enhancer factor 2B
6byy_A1e-171091184MEF2 CHIMERA
6byy_B1e-171091184MEF2 CHIMERA
6byy_C1e-171091184MEF2 CHIMERA
6byy_D1e-171091184MEF2 CHIMERA
6c9l_A1e-171091184Myocyte-specific enhancer factor 2B
6c9l_B1e-171091184Myocyte-specific enhancer factor 2B
6c9l_C1e-171091184Myocyte-specific enhancer factor 2B
6c9l_D1e-171091184Myocyte-specific enhancer factor 2B
6c9l_E1e-171091184Myocyte-specific enhancer factor 2B
6c9l_F1e-171091184Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539646.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139421e-137AL713942.4 Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-137AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-137CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619582.15e-53agamous-like MADS-box protein AGL61
TrEMBLA2Y2A55e-53A2Y2A5_ORYSI; Uncharacterized protein
STRINGORGLA12G0089600.11e-52(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-25AGAMOUS-like 61