PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539650.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 178aa    MW: 19736.3 Da    PI: 7.7967
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539650.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.11.1e-091203655
            G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                       m+vkgLtl h+kSHLQkYRl
  KN539650.1_FGP002  1 MGVKGLTLFHLKSHLQKYRL 20
                       99*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-8121IPR009057Homeodomain-like
PfamPF143793.4E-2161106IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGVKGLTLFH LKSHLQKYRL GKQSGKEMAE QSKDASYILG AQSGTNLSPT VPTPDLKESQ  60
ELKEALRAQM EVQRKLHEQV EVQRHVQIRM EAYQNYIDTL LEKACNIVSE QLNGFSISDH  120
DLTSAGVMLS SSDTLSPSIF HQLSVSSISL HSPGGKSSPF AADADLFFQK APEKRKSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539650.1_FGP002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038730.0AK103873.1 Oryza sativa Japonica Group cDNA clone:J033149L11, full insert sequence.
GenBankCT8342320.0CT834232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036L13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650961.11e-127protein PHR1-LIKE 3
SwissprotQ8LAJ71e-34PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A0E0AUD41e-127A0A0E0AUD4_9ORYZ; Uncharacterized protein
TrEMBLI1QHZ41e-127I1QHZ4_ORYGL; Uncharacterized protein
STRINGORGLA08G0104500.11e-128(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.14e-37G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]