PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539656.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 226aa    MW: 25726.2 Da    PI: 6.7942
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539656.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.3e-101521872055
                        HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  KN539656.1_FGP010 152 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 187
                        5679*****************************885 PP
2ELK36.51e-12107128122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK qLl+KYsgyL+sL+qEFs
  KN539656.1_FGP010 107 ELKFQLLKKYSGYLSSLRQEFS 128
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037908.3E-8120IPR005540KNOX1
SMARTSM012561.4E-14455IPR005541KNOX2
PfamPF037912.9E-151953IPR005541KNOX2
PfamPF037891.3E-9107128IPR005539ELK domain
SMARTSM011885.7E-7107128IPR005539ELK domain
PROSITE profilePS5121311.401107127IPR005539ELK domain
PROSITE profilePS5007112.892127190IPR001356Homeobox domain
SuperFamilySSF466895.56E-20128202IPR009057Homeodomain-like
SMARTSM003894.4E-13129194IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-28132191IPR009057Homeodomain-like
CDDcd000862.29E-12139191No hitNo description
PfamPF059205.1E-17147186IPR008422Homeobox KN domain
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAHPQYSALL AAYLDCQKEA YCNMLAKYRE ELTRPIDEAM EFLKRVESQL DTIAGGAHGG  60
SGGGAGSARL LLADGKSECV GSSEDDMDPS GRENEPPEID PRAEDKELKF QLLKKYSGYL  120
SSLRQEFSKK KKKGKLPKEA RQKLLHWWEL HYKWPYPSET EKIALAESTG LDQKQINNWF  180
INQRKRHWKP SEDMPFVMME GFHPQNAAAL YMDGPFMADG MYRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539656.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0501810.0AF050181.1 Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955415.11e-137homeobox protein rough sheath 1
SwissprotO650341e-137KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-137KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A0E0AFG91e-159A0A0E0AFG9_9ORYZ; Uncharacterized protein
TrEMBLI1Q7T11e-159I1Q7T1_ORYGL; Uncharacterized protein
STRINGOGLUM07G01740.11e-160(Oryza glumipatula)
STRINGORGLA07G0017300.11e-160(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-82KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]