PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539660.1_FGP007

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 122aa MW: 13519.9 Da PI: 8.8228

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539660.1_FGP007	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.8	5.3e-31	4	100	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+q KN539660.1_FGP007 4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGQWQA 95 6******************************************************************************************* PP DUF260 88 eqlka 92 +q++ KN539660.1_FGP007 96 CQAAD 100 *9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.869	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-25	4	100	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAGPDH 60 LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GQWQACQAAD SHVPPVMYLC DVCLYRLSQI 120 RL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539660.1_FGP007

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	1e-161	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628244.1	4e-69	LOB domain-containing protein 40
Swissprot	Q9M886	3e-61	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A0E0FM49	7e-68	A0A0E0FM49_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0MX47	8e-68	A0A0E0MX47_ORYRU; Uncharacterized protein
STRING	ORUFI01G19440.1	1e-68	(Oryza rufipogon)
STRING	ONIVA01G19320.1	1e-68	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	1e-54	LOB domain-containing protein 40