PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539662.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 131aa    MW: 14239 Da    PI: 6.7845
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539662.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB149.85.4e-471811797
              NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                       mkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrkting+dll+a++tlGfe+yv+plk+yl+kyre+eg++
  KN539662.1_FGP008  1 MKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREMEGDS 81
                       9******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.7E-43189IPR009072Histone-fold
PfamPF008082.4E-21155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.65E-32186IPR009072Histone-fold
PRINTSPR006151.4E-221937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-223856No hitNo description
PRINTSPR006151.4E-225775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MKKAVPANGK IAKDAKETLQ ECVSEFISFV TSEASDKCQK EKRKTINGED LLFAMGTLGF  60
EEYVDPLKIY LHKYREMEGD SKLSSKAGDG SVKKDTIGPH SGASSSSAQG MVGAYTQGMG  120
YMQPQYHNGD T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-391761893NF-YB
4awl_B2e-391761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-391761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539662.1_FGP008
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0954380.0AB095438.1 Oryza sativa Japonica Group OsHAP3A mRNA for HAP3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611523.14e-93nuclear transcription factor Y subunit B-2 isoform X2
SwissprotQ5QMG37e-92NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLA0A0E0C9Y39e-92A0A0E0C9Y3_9ORYZ; Uncharacterized protein
STRINGORGLA01G0297200.13e-86(Oryza glaberrima)
STRINGOBART01G36280.13e-86(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.17e-55nuclear factor Y, subunit B10