PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539677.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 456aa    MW: 48721.6 Da    PI: 3.6355
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539677.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.19.8e-2571371128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 
                        l pG++F+P+d++lv +yL ++++g++l+l+ vi e+d +++ Pw+L +  +++ +e +fF++++ k+ +gkr++r +   g+W+ + +   
  KN539677.1_FGP001   7 LLPGLKFDPSDHDLVGRYLLRRLQGQPLPLDGVILEADPLSAPPWKLLAD-HGRGDEAFFFAEAQAKNGKGKRRKRtVEGGGFWQGQRTC-- 95 
                        579***************************999**************743.456789*******************555599**965553.. PP

                NAM  92 vlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v          + e  + k +L f+ ++ ++g ++ Wvmhey+ 
  KN539677.1_FGP001  96 VDGDgsgggggGLEIAWRKYVLSFF-ADGERG-SSGWVMHEYAC 137
                        333233555544444889999****.455554.89*******75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-294144IPR003441NAC domain
PROSITE profilePS5100527.1227158IPR003441NAC domain
PfamPF023653.4E-159136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAAADGLLPG LKFDPSDHDL VGRYLLRRLQ GQPLPLDGVI LEADPLSAPP WKLLADHGRG  60
DEAFFFAEAQ AKNGKGKRRK RTVEGGGFWQ GQRTCVDGDG SGGGGGGLEI AWRKYVLSFF  120
ADGERGSSGW VMHEYACTDQ GSSGVIDDSS LVFRDLPDVI DLPAVEEADA SDGAEAALLN  180
EHLPLDLTDQ NSYGMMGGDQ LLLPDLPGTI NDDMPDLFVS QAEEASAMPA ISYHSSGFMG  240
NEVAALSDFE LPESYSSSDA MDGEALALSN YEFPESFEED LSCIDFATAN ASSLGFPMDG  300
YPMDELFDDM PDQGSSGAMD DSSVVFRDLP GMINLPAAEE ADAIGDAETA LPRDLADDSN  360
GTDRNSYGVM GDDQDRLLLP ELPRRIDMPD LFVSQAEEAL PAPSSSGAMD GETLALSDFE  420
FPESVEEVLS CMDLSTVDMS CLDVPIDELL DDLPAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539677.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343460.0AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.10.0uncharacterized protein LOC107275325
TrEMBLA0A0E0HCN50.0A0A0E0HCN5_ORYNI; Uncharacterized protein
STRINGONIVA05G12270.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137