PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539678.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 249aa    MW: 27722.7 Da    PI: 6.5342
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539678.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.9e-10120146127
                        XXXXCHHHCHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkae 27 
                        e+elkrerrkq+NRe+ArrsR+RK+++
  KN539678.1_FGP007 120 ERELKRERRKQSNRESARRSRLRKQER 146
                        89***********************98 PP
2bZIP_129.12.1e-091662032663
                        HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        +e+eeL +kv eL+a N++L+ el++lkk ++ +++e+
  KN539678.1_FGP007 166 QECEELSQKVTELTAVNSTLRTELDKLKKDCEDMEAEN 203
                        89********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-16113201No hitNo description
SMARTSM003382.5E-15120205IPR004827Basic-leucine zipper domain
PfamPF001709.0E-8120146IPR004827Basic-leucine zipper domain
CDDcd147025.13E-14125196No hitNo description
PROSITE patternPS000360127142IPR004827Basic-leucine zipper domain
PfamPF001701.9E-6166203IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MANQGPTYRP TNGPLNASQF VQLPPSGDGG SEDSSERRDD ADEKGLSPAK WRKLGRPDIE  60
GETSQAAAMS EQHPVKAAPN LNIGMDIWSN STMAAMPSGQ AEVNAGTHLR RDKALSQMDE  120
RELKRERRKQ SNRESARRSR LRKQERPKSF CHPPNYPVIF YGLTNQECEE LSQKVTELTA  180
VNSTLRTELD KLKKDCEDME AENSQLMDEM AQSEGSSVIT TLSIKIDTSK DRHGSSSQLN  240
KRTNDDSKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142RRSRLRK
2136143RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539678.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022501e-121AK102250.1 Oryza sativa Japonica Group cDNA clone:J033088G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632128.11e-122DNA-binding protein EMBP-1 isoform X2
RefseqXP_015632129.11e-122DNA-binding protein EMBP-1 isoform X3
RefseqXP_025879814.11e-122DNA-binding protein EMBP-1 isoform X1
SwissprotP250322e-41EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0D3FQH31e-148A0A0D3FQH3_9ORYZ; Uncharacterized protein
STRINGOBART03G38300.11e-149(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.13e-26G-box binding factor 1