PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539693.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 167aa    MW: 17294.2 Da    PI: 5.2315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539693.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021105127123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp+C+k F +   L  H r+H
  KN539693.1_FGP003 105 FVCPICSKEFGSGQALGGHKRSH 127
                        89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-51740IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.99E-91739No hitNo description
PfamPF139122.2E-51739IPR007087Zinc finger, C2H2
SMARTSM003550.161739IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5331740IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576672.99E-9100127No hitNo description
PROSITE profilePS5015710.18105128IPR007087Zinc finger, C2H2
PfamPF139122.3E-12105128IPR007087Zinc finger, C2H2
SMARTSM003550.048105127IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDDDDVVVLS SASATRHSCK VCGKGFACGR SLGGHMRSHS LTEVDAVAAA VAPAYERADD  60
DEGGDGKTPE LSIETSFSSA STSVSPDTMI SASTVAKTVK KPTKFVCPIC SKEFGSGQAL  120
GGHKRSHSIA GELYERGHAD GIVKLEQPLL ADRFLDLNLP APGGDDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539693.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1379991e-132AC137999.2 Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence.
GenBankAK1055831e-132AK105583.1 Oryza sativa Japonica Group cDNA clone:001-128-E09, full insert sequence.
GenBankAP0149591e-132AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630118.11e-55uncharacterized protein LOC4333158
TrEMBLA0A0D3FK152e-54A0A0D3FK15_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NWS92e-54A0A0E0NWS9_ORYRU; Uncharacterized protein
TrEMBLI1PCE92e-54I1PCE9_ORYGL; Uncharacterized protein
STRINGORUFI03G22750.13e-55(Oryza rufipogon)
STRINGORGLA03G0204500.13e-55(Oryza glaberrima)
STRINGOBART03G22030.13e-55(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-13C2H2-like zinc finger protein