PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539702.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 180aa    MW: 19832.1 Da    PI: 5.7197
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539702.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.84.3e-124880234
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34
                       +++k +rr+++NReAAr+sR+RKka+i++Le+ 
  KN539702.1_FGP009 48 PRDKIQRRLAQNREAARKSRLRKKAYIQNLETS 80
                       57999*************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-647110IPR004827Basic-leucine zipper domain
PfamPF001701.6E-84984IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.5314991IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-75195No hitNo description
Gene3DG3DSA:1.20.5.1709.1E-95297No hitNo description
PROSITE patternPS0003605469IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAVAPPPLTE PKFESQLALP LQQHGDDQDD AALQEHASDS FEQEASKPRD KIQRRLAQNR  60
EAARKSRLRK KAYIQNLETS RMKLAHLEQE ITRARQQGAY INRSSNPSSL PAPIDSGVVT  120
FEVEYAQWVE EQGRQAAELR AALQAAAAEG PELRAAVEAA LAHYDRAGCE PEKLGVIPGA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539702.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315140.0CT831514.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129B22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883355.12e-93transcription factor TGAL10-like isoform X3
RefseqXP_025883356.12e-93transcription factor TGAL10-like isoform X3
SwissprotQ6ZBS89e-95TGL10_ORYSJ; Transcription factor TGAL10
TrEMBLA0A0D3GWW91e-100A0A0D3GWW9_9ORYZ; Uncharacterized protein
STRINGOMERI08G04690.11e-100(Oryza meridionalis)
STRINGOBART08G04650.11e-101(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2953444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.23e-34TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]