PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539716.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 714aa    MW: 79542.8 Da    PI: 7.5942
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539716.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-32162218158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+Rg+gGrF
  KN539716.1_FGP007 162 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGTGGRF 218
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.7E-37160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.032161221IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.6E-28163218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-24164186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.6E-24195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MESRPGGTNL VEPRGQGALP SGIPIQQPWW TTSAGVGAVS PAVVAPGSCA GISLSGRDGG  60
GDDAAEESSD DSRRSGETKD GSTGQEKHHA TSQMTALASD YLTPFSQLEL NQPVASAAYQ  120
YPDSYYMGMV GPYGPQAMSA QTHFQLPGLT HSRMPLPLEI SEEPVYVNAK QYHGILRRRQ  180
SRAKAELEKK VVKARKPYLH ESRHQHAMRR ARGTGGRFLN TKKNEDGAPS EKAEPNKGYG  240
LNRYGFDFKP EMMVNRRIIE KVALVYECDL CVEKYSDNLR CASKHLQDIS GMDCEGWSLL  300
KIATALKLLF RKSEYLRLVH DAPKYEGKLS ERVKLTKELH EAERHKWYNR RVDNGGWPYE  360
LLDGHVDAFH RSYLATTQVQ KGQQQVEVCT LRQRTPHMVW SLDPRWIPRR MRMATLVNSI  420
STPWQVRMEP WIAQWKGALD DVHEEQMPHD PATFEDYIRW YLARTRIRVK QPIAKPHTPV  480
HVSPPPPPPP PPVLVAPPPP PDEADYQSHM DYAIHAAADL LHQADSILRR LESGIQLTVE  540
EHMSNFDRFQ RMARMILRSL SFCAPSDVYP PSHWPPAVEP GVRQSSSTAP SGLHLRSSTQ  600
AASGQHSVST RGLYTSPSDM FAGVGTSTQG FRTSPPDVFA GVGTSAHGLH PPSGPFIEGD  660
LEDDDFEVTA EFTPALQRCL KLGDLLISPG TPSLIIQGYK PFHNRCEVVN INAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-20162225265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539716.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880300.0AB288030.1 Oryza sativa Japonica Group OsHAP2D mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0698540.0AK069854.1 Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence.
GenBankEU8470120.0EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-29nuclear factor Y, subunit A7