PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539717.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 168aa    MW: 19542.3 Da    PI: 9.6578
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539717.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.89.3e-28102152252
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEE CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitY 52 
                        +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++t+
  KN539717.1_FGP004 102 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTW 152
                        8**********************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-2986153IPR003657WRKY domain
SuperFamilySSF1182902.75E-2493154IPR003657WRKY domain
PROSITE profilePS5081126.19996152IPR003657WRKY domain
SMARTSM007743.9E-27101160IPR003657WRKY domain
PfamPF031062.7E-21102153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSGEYQFQDE LAPLFARPGG GAGEMQMLPS SWFADYLQAG TPMQMDYDLM CRALELPVGE  60
DVKREVVWQR SAAKGGKAGK GEKRARQPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY  120
PRSYYRCTTQ KCPVKKRVER SYQDPAVVIT TWYRVFYWVS YHFYALTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2391152768Probable WRKY transcription factor 4
2lex_A4e-2391152768Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539717.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418441e-133AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBankAY3418551e-133AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAY8706041e-133AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458273.17e-46probable WRKY transcription factor 48
SwissprotQ8VWJ26e-41WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A287L9A21e-51A0A287L9A2_HORVV; Uncharacterized protein
STRINGMLOC_54606.14e-49(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-39WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]