PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539718.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 174aa    MW: 20086.3 Da    PI: 9.9323
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539718.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.18.1e-5431301128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+
  KN539718.1_FGP003   3 LPPGFRFHPTDDELVGYYLKRKVDSLKIEL-EVIPVIDLYKFEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATSTGYWKATGKDR 93 
                        79****************************.99**************95334445667********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +  ge+ gl+ktLvfykgrap ge+tdWvmheyrl
  KN539718.1_FGP003  94 KIAC-AGEVFGLRKTLVFYKGRAPGGERTDWVMHEYRL 130
                        ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-612152IPR003441NAC domain
PROSITE profilePS5100557.8383153IPR003441NAC domain
PfamPF023658.3E-304130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MTLPPGFRFH PTDDELVGYY LKRKVDSLKI ELEVIPVIDL YKFEPWELPE KSFLPKRDLE  60
WFFFCPRDRK YPNGSRTNRA TSTGYWKATG KDRKIACAGE VFGLRKTLVF YKGRAPGGER  120
TDWVMHEYRL CQDLAHGVSN FIGAYALCRV IKRHEAGLHG EPPAAKAKGM MSKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-55115715169NO APICAL MERISTEM PROTEIN
1ut4_B5e-55115715169NO APICAL MERISTEM PROTEIN
1ut7_A5e-55115715169NO APICAL MERISTEM PROTEIN
1ut7_B5e-55115715169NO APICAL MERISTEM PROTEIN
4dul_A5e-55115715169NAC domain-containing protein 19
4dul_B5e-55115715169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539718.1_FGP003
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332460.0CT833246.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI238F12, full insert sequence.
GenBankCT8332470.0CT833247.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612876.11e-125NAC domain-containing protein 71
SwissprotO496976e-82NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A0D3HGU31e-124A0A0D3HGU3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0R2S11e-124A0A0E0R2S1_ORYRU; Uncharacterized protein
TrEMBLI1QW581e-124I1QW58_ORYGL; Uncharacterized protein
TrEMBLQ7G1M81e-124Q7G1M8_ORYSJ; No apical meristem, putative, expressed
STRINGORUFI10G20470.11e-125(Oryza rufipogon)
STRINGORGLA10G0144100.11e-125(Oryza glaberrima)
STRINGOBART10G19230.11e-125(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62093854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-84NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]