PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539724.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 129aa    MW: 14372.1 Da    PI: 8.5067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539724.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.4e-052749123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  KN539724.1_FGP010 27 YPCGFCRREFRSAQALGGHMNVH 49
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-62453No hitNo description
PROSITE profilePS5015710.7412754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MNNNSSGSSR REEAYWRQQQ LILQRSYPCG FCRREFRSAQ ALGGHMNVHR RDRARLRLRL  60
SLTQQPPQPA DDAAKSTPPL LPNLNYPPPP PPPHDGASSS APPHLPRLPA DDDADADAGL  120
DLELRLAFC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539724.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126108e-85CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624301.11e-41transcriptional regulator SUPERMAN
TrEMBLA0A0D3EZF71e-41A0A0D3EZF7_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YKY22e-41A0A0D9YKY2_9ORYZ; Uncharacterized protein
TrEMBLI1NW981e-41I1NW98_ORYGL; Uncharacterized protein
STRINGOGLUM02G00100.13e-42(Oryza glumipatula)
STRINGORGLA02G0000400.12e-42(Oryza glaberrima)
STRINGOBART02G00100.12e-42(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.14e-11C2H2 family protein