PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539729.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 186aa    MW: 19958.3 Da    PI: 5.0724
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539729.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-172474255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       g++G+++++  grW AeIrd ++     +r+++g+f+taeeAa a++a +++l+g
  KN539729.1_FGP001 24 GFRGIHQRP-YGRWGAEIRDKVI---EgARVWIGTFDTAEEAALAYDATARRLYG 74
                       89*******.7*********444...25************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-102474IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-192483IPR016177DNA-binding domain
PROSITE profilePS5103220.4292482IPR001471AP2/ERF domain
SMARTSM003802.2E-242488IPR001471AP2/ERF domain
PRINTSPR003674.9E-92536IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-252582IPR001471AP2/ERF domain
CDDcd000181.99E-232584No hitNo description
PRINTSPR003674.9E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MKKEEEVVAK KSNKTGRRRA SKHGFRGIHQ RPYGRWGAEI RDKVIEGARV WIGTFDTAEE  60
AALAYDATAR RLYGCNAKTN FPVAGAGDDD DRQAAEPAAV VVAAPAFTGE EMGKQTAPAA  120
AADPGAGELG PVLLCQALEA TNGWQYEAYG YGYSMGLERL DNYAYAGDVQ PLGLGGSTTT  180
DCLWMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-182283464ATERF1
3gcc_A2e-182283464ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539729.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8375281e-68AL837528.5 Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-68AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-68CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664719.22e-31PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A0E0RJP43e-76A0A0E0RJP4_ORYRU; Uncharacterized protein
STRINGORUFI12G20110.15e-77(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156151014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-14ethylene-responsive element binding protein