PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539729.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 77aa    MW: 8429.58 Da    PI: 11.0074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539729.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-084874430
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                HLH  4 ahnerErrRRdriNsafeeLrellPka 30
                       ahn  E+rRR +i +++ +L++l+P +
  KN539729.1_FGP002 48 AHNLTEKRRRFKITERLRTLQRLVPGC 74
                       8************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.8994477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-74776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-94874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-64874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MEKMPAAASP TTTMNKDETS DDSGERKKKK ASSAAGKASK HHHAAAGAHN LTEKRRRFKI  60
TERLRTLQRL VPGCDKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257EKRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539729.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-57CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.19e-25transcription factor APG
TrEMBLA0A0E0BUV31e-45A0A0E0BUV3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0JC051e-45A0A0E0JC05_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RJL81e-45A0A0E0RJL8_ORYRU; Uncharacterized protein
STRINGOGLUM12G19530.12e-46(Oryza glumipatula)
STRINGORUFI12G19910.12e-46(Oryza rufipogon)
STRINGONIVA12G16610.12e-46(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-07bHLH family protein