PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539756.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 242aa    MW: 27894.7 Da    PI: 5.9861
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539756.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB72.38.3e-231195387
              NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
                       ++d  lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al +lGf +y+e++++  
  KN539756.1_FGP001 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQAAY 95
                       67999**************************************************************************998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.2E-388140IPR009072Histone-fold
SuperFamilySSF471139.11E-3412140IPR009072Histone-fold
PfamPF008081.8E-191579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE  60
VCSREDKKTI APEHVLRALQ DLGFREYIEE VQAAYEHHKH DTLDSPKASK FTGVEMTEEQ  120
AVAEQQRMFA EARARMNNGA AKPKEPEPEA QQQTQHPLQP QLHPQPQQPL QPQLQLHPQP  180
QQQPSQLHPQ QLLHPQSQQT PQPQPQPQYK EKLVYFRWHL LGLCVPLDSF RFPCFMYNVN  240
PV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-321213312133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539756.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4649020.0AF464902.1 Oryza sativa repressor protein (Dr1) mRNA, complete cds.
GenBankCT8301300.0CT830130.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058B22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650908.11e-142protein Dr1 homolog isoform X2
SwissprotP495921e-77NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A0E0AIJ21e-141A0A0E0AIJ2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IB741e-141A0A0E0IB74_ORYNI; Uncharacterized protein
TrEMBLA2YUS81e-141A2YUS8_ORYSI; Uncharacterized protein
TrEMBLQ0J6031e-141Q0J603_ORYSJ; Os08g0383700 protein
TrEMBLQ8W0W91e-141Q8W0W9_ORYSA; Repressor protein
STRINGOGLUM07G10490.11e-142(Oryza glumipatula)
STRINGONIVA08G13790.11e-142(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.44e-80nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]