PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539761.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 198aa    MW: 21794 Da    PI: 10.6506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539761.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.58.8e-171661555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  KN539761.1_FGP002 16 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 61
                       *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.7E-19970IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.0251160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-201483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-171665No hitNo description
PfamPF000102.4E-141661IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-181766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MRSSISTKRS RAAAIHNESE RKRRDRINQK MKTLQKLVPN SSKTDKASML DEVIDYLKQL  60
QAQVQVMSRM GSMMMPMGMA MPQLQMSVMA QMAQIGLSMM NMGQAGGYAP MHMHTPPFLP  120
VSWDAAAASS SSAAAGDRPP PPTGAATSDA FSAFLASQAA QQNAQQPNGM EAYNRMMAMY  180
QKLNHHQQQQ DQPSNSRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924ERKRRD
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539761.1_FGP002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879250.0AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612716.11e-93transcription factor UNE10 isoform X1
RefseqXP_015612717.11e-93transcription factor UNE10 isoform X1
SwissprotQ8GZ381e-37UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0E0MAL63e-97A0A0E0MAL6_ORYPU; Uncharacterized protein
STRINGOPUNC10G16560.12e-95(Oryza punctata)
STRINGOBART10G18190.21e-97(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-31bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]