PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539763.1_FGP006

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 382aa MW: 41418.7 Da PI: 5.786

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539763.1_FGP006	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.6	2.9e-28	236	286	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQ KN539763.1_FGP006 236 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQ 286 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.115	233	293	IPR017930	Myb domain
SuperFamily	SSF46689	7.7E-13	234	286	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-23	234	286	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	236	286	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MEVDHADRDG ARRRCREYLL ALEEERRKIQ VFQRELPLCF DLVTQTIEGM RSQMDGAGSE 60 ETVSDQGPPP VLEEFIPLKP SLSLSSSEEE STHADAAKSG KKEEAETSDR HSSPPPPPPV 120 EAKKVTPDWL QSVQLWSQEE SQQPSSPSPT PTKDLPCKPV ALNARKVGGA FQPFEKEKRA 180 ELPASSTTAA ASSTVVGDSG DKPTDDDTEK HMETDKDIDK DSKDKDKEGQ SQPHRKPRRC 240 WAPELHRRFL QALQQLGGSH VATPKQIREL MKVDGLTNDE VKSHLQFVVV GSIWVPPPEY 300 AAAAAAQQHV QLAAAGNNAS GSANPVYAPV AMLPAGLQPH SHRQQQQQGQ RHSGSEGRRS 360 GDAGDGSSSS PAVSSSSQTT SA

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MEVDHADRDG ARRRCREYLL ALEEERRKIQ VFQRELPLCF DLVTQTIEGM RSQMDGAGSE  60
ETVSDQGPPP VLEEFIPLKP SLSLSSSEEE STHADAAKSG KKEEAETSDR HSSPPPPPPV  120
EAKKVTPDWL QSVQLWSQEE SQQPSSPSPT PTKDLPCKPV ALNARKVGGA FQPFEKEKRA  180
ELPASSTTAA ASSTVVGDSG DKPTDDDTEK HMETDKDIDK DSKDKDKEGQ SQPHRKPRRC  240
WAPELHRRFL QALQQLGGSH VATPKQIREL MKVDGLTNDE VKSHLQFVVV GSIWVPPPEY  300
AAAAAAQQHV QLAAAGNNAS GSANPVYAPV AMLPAGLQPH SHRQQQQQGQ RHSGSEGRRS  360
GDAGDGSSSS PAVSSSSQTT SA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539763.1_FGP006

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT831013	0.0	CT831013.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623779.1	0.0	transcription factor NIGT1
Swissprot	Q6Z869	0.0	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A0E0CJV1	0.0	A0A0E0CJV1_9ORYZ; Uncharacterized protein
STRING	OMERI02G14410.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	9e-49	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]