PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539767.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 230aa    MW: 26226.7 Da    PI: 9.7947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539767.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.98.8e-23123184259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE.E-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve.rsaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK++++s++ r Y++Ct++   +C +kk+v+ r+a +p ++++tY +eH+++
  KN539767.1_FGP001 123 KDGYQWRKYGQKNIQDSNYLRLYFKCTFSherRCAAKKQVQqRDAGEPPMFVVTYLNEHTCQ 184
                        7**************************988899*******7356789*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-25111187IPR003657WRKY domain
SuperFamilySSF1182901.06E-22117186IPR003657WRKY domain
SMARTSM007747.8E-34122185IPR003657WRKY domain
PfamPF031062.4E-23123184IPR003657WRKY domain
PROSITE profilePS5081116.88124186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAFGQDTIEQ LYRELAGGRR LSAKLQALLE GPLDRRGQKE AVDVSRELGR VFMVSLYMLK  60
PCSNSSRRPE GVTRTAPETR TDDSICLHTP ARVKRVRSEE VLVKNGREEV VTRTEIITPS  120
PYKDGYQWRK YGQKNIQDSN YLRLYFKCTF SHERRCAAKK QVQQRDAGEP PMFVVTYLNE  180
HTCQQPQAVP GTPNTAGRHL YWTVTSGRPV GRERTYQDEQ AAGRNSSCLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-141241831068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539767.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033021e-157AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033481e-157AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149571e-157AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-157CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646438.11e-104PREDICTED: probable WRKY transcription factor 62
TrEMBLA0A0D3EVL31e-139A0A0D3EVL3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FV241e-139A0A0E0FV24_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N4821e-139A0A0E0N482_ORYRU; Uncharacterized protein
TrEMBLA2WWF51e-139A2WWF5_ORYSI; Uncharacterized protein
TrEMBLI1NSS91e-139I1NSS9_ORYGL; Uncharacterized protein
TrEMBLQ8RUA91e-139Q8RUA9_ORYSJ; WRKY transcription factor 20
STRINGORUFI01G38670.11e-140(Oryza rufipogon)
STRINGONIVA01G40370.11e-140(Oryza nivara)
STRINGORGLA01G0291900.11e-140(Oryza glaberrima)
STRINGOBART01G35350.11e-140(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-18WRKY DNA-binding protein 62