PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539767.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 152aa    MW: 16262.7 Da    PI: 10.4097
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539767.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.86.9e-16110146236
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EE CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkk 36 
                         Dg+ WrKYGqKe++g ++pr YYrC+++  gC +++
  KN539767.1_FGP004 110 ADGFIWRKYGQKEINGCKHPRLYYRCAFRgqGCLATR 146
                        6***************************9989*9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-15102147IPR003657WRKY domain
PROSITE profilePS5081115.296104152IPR003657WRKY domain
SuperFamilySSF1182902.09E-14105147IPR003657WRKY domain
SMARTSM007741.1E-8109151IPR003657WRKY domain
PfamPF031061.1E-13111147IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MAMLGSSSAV VLELMTMGYQ SAAYLGELLR AASPAQAGDE QQELAAEILR CCDRVIAKLS  60
RGGATGATTG KKRKAAESAA VTSSSLPVTP TKRRARGAEA VREVRSGTTA DGFIWRKYGQ  120
KEINGCKHPR LYYRCAFRGQ GCLATRRGKN TC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539767.1_FGP004
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086570.0AK108657.1 Oryza sativa Japonica Group cDNA clone:002-148-E07, full insert sequence.
GenBankAY8706060.0AY870606.1 Oryza sativa (japonica cultivar-group) WRKY21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621234.12e-93probable WRKY transcription factor 30
TrEMBLA0A0E0FV263e-92A0A0E0FV26_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N4844e-92A0A0E0N484_ORYRU; Uncharacterized protein
TrEMBLA2WWF83e-92A2WWF8_ORYSI; Uncharacterized protein
TrEMBLA2ZZ247e-93A2ZZ24_ORYSJ; Uncharacterized protein
TrEMBLI1NST24e-92I1NST2_ORYGL; Uncharacterized protein
TrEMBLQ8RV014e-92Q8RV01_ORYSJ; Os01g0821600 protein
STRINGORUFI01G38690.17e-93(Oryza rufipogon)
STRINGOS01T0821600-017e-93(Oryza sativa)
STRINGONIVA01G40390.15e-93(Oryza nivara)
STRINGORGLA01G0292200.16e-93(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-13WRKY DNA-binding protein 46