PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539785.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1021aa    MW: 114158 Da    PI: 7.1017
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539785.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-05116137627
                        -SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                        Cr+++++G+Ck+   Ck++H++
  KN539785.1_FGP001 116 CRYYMKFGECKHMTFCKYNHPK 137
                        ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.559110138IPR000571Zinc finger, CCCH-type
SuperFamilySSF530981.9E-12862988IPR012337Ribonuclease H-like domain
CDDcd062221.70E-9867987No hitNo description
PfamPF134561.9E-25868990No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MAFAASIWTF MPGKKGSVVQ GPNTRTLTNA HDGILDDINC AQIAGKHVGD HSNCANVIKE  60
NPCLSSSKHY VGFCSADRSA GPSCFIYSFR PDNERLESSL LGKLVQYPER PGEPFCRYYM  120
KFGECKHMTF CKYNHPKYRF SCKTTNTIRS DSLCLHDQQI TILENQFGLP SLVDKATANT  180
TNLVASASSS MTPDEIGEGK NNPDEVFVCI CGEKLLFHTN FNTTAVKELV VFALQRRNIK  240
YCDIYVTWLI PTEYERMDEL IDRAVRDNNN DLFYYVNLPP ELINPYKDTW RNITWYGTFD  300
LRDVLISSGH VRISPHIVEN TYTPIGGRLD YLKLVSILKD KFVDNLQGSS PCHLNNLLSV  360
LCTTSHETYG RSDLFITFLI NHPCLLSCGE RVARYLQYDH MITNLVQRDL RKFKQYLNDT  420
FGDPPSWIAD ISWVPDMWKT YNYSPNNNST LWTPRYTLDL NSCSHFARNF LSHFGREAAE  480
AAVSQNLEFL LPTIMMLMPV YNGPHHWNND FMEIDLRFDT CGVNSTYHFA AILLSEVEED  540
ASAPRVVRGL NFIGPQKDKV LSASSSSRNS QVSCVRGGTP ANFGDRKDDE AVNELDKDDM  600
CGAAETLGKG VQQMQVEDIG PSLNLAARGP CSREKVSMSS DYGLSDDKAD EVDSVKAGGA  660
LMQVGRKSPD WLIKKKQGLP SREVEKLSSA RVFIRKRDIG KPRKMNIKLS ASDLEPFNRM  720
IQPDAKGEED EFHAVISCTR PRALRETMRA SWRLPDERSL LKLGPGWLLG GLDKLSENER  780
AQFLLVLWRA WYLRNDCVFG SGQATVKGSA SFLLNLWNSL CPSGSAMLEN EKGKTVSEGR  840
QSDVTGCGER TQVAGVWQAP AMGWVKINVD GAYVPQTSTG SVGIVIRNSE GNVLLTSWKL  900
LRNCASAEFA EAAACREGIR LANEWVKEPC ILETDCAGVE SYLRSAVANR SQIWPLIREA  960
RAGLRAAPEA RTALIRRGAN KVAHELAQLA IRNREAVVLR LQAPVCVAEQ LAQDCNPSSE  1020
V
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539785.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035630.0AP003563.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1168H06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2038288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.12e-08C3H family protein