PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539799.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 1363aa    MW: 149273 Da    PI: 7.7349
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539799.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.1e-4096173178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv++C+adl++ak+yhrrhkvCe+h k++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  KN539799.1_FGP001  96 MCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 173
                        6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.1E-3489158IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.94994171IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-3795174IPR004333Transcription factor, SBP-box
PfamPF031103.1E-2997170IPR004333Transcription factor, SBP-box
SuperFamilySSF498993.72E-2711241329IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:2.60.120.2005.4E-4711261330IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF001395.9E-2411261241IPR001220Legume lectin domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 1363 aa     Download sequence    Send to blast
MWDWDSRALT AKPSSDALRV NAGLGLNLQL GLREDAATPM DVSPAATTVS SSPSPPASSA  60
PAQEPVVRPS KRVRSGSPGS ASGGGGEGGG GGSYPMCQVD DCRADLTNAK DYHRRHKVCE  120
IHGKTTKALV GNQMQRFCQQ CSRFHPLSEF DEGKRSCRRR LAGHNRRRRK TQPTDVASQL  180
LLPGNQENAA NRTQDIVNLI TVIARLQGSN VGKLPSIPPI PDKDNLVQII SKINSINNGN  240
SASKSPPSEA VDLNASHSQQ QDSVQRTTNG FEKQTNGLDK QTNGFDKQAD GFDKQAVPST  300
MDLLAVLSTA LATSNPDSNT SQSQGSSDCS GNNKSKSQST EPANVVNSHE KSIRVFSATR  360
KNGALERSPE MYKQPDQETP PYLSLRLFGS TEEDVPCKMD TANKYLSSES SNPLDERSPS  420
SSPPVTHKFF PIRSVDKDAR IADYGEDIAT VEVSTSRAWR APPLELFKDS ERPIENGSPP  480
NPAYQSCYTS TSCSDHSPST SNSDGQDRTG RIIFKLFGKE PSTIPGNLRG EIVNWLKHSP  540
NEMEGYIRPG CLVLSMYLSM PAIAWNELEE NLLQRVNTLV QGSDLDFWRK GRFLVRTDAQ  600
LVSYKDGATR LSKSWRTWNT PELTFVSPIA VVGGRKTSLI LKGRNLTIPG TQIHCTSTGK  660
YISKEVLCSA YPGTIYDDSG VETFDLPGEP HLILGRYFIE VENRFRGNSF PVIIANSSVC  720
QELRSLEAEL EGSQFVDGSS DDQAHDARRL KPKDEVLHFL NELGWLFQKA AASTSAEKSD  780
SSGLDLMYFS TARFRYLLLF SSERDWCSLT KTLLEILAKR SLASDELSQE TLEMLSEINL  840
LNRAVKRKSS HMARLLVQFV VVCPDDSKLY PFLPNVAGPG GLTPLHLAAS IEDAVDIVDA  900
LTDDPQQIGL SCWHSALDDD GQSPETYAKL RNNNAYNELV AQKLVDRKNN QVTIMVGKEE  960
IHMDQSGNVG EKNKSAIQAL QIRSCNQCAI LDAGLLRRPM HSRGLLARPY IHSMLAIAAV  1020
CVCVCVFMRA LLRFNSGRSF KWERLDFVIL LVDKTSPEIS VCNLQRALCL GKNKAWCVAN  1080
GFRCLLRELD AFAGHIHGDD DGANHLWKSN SSRLQRPSGE REPGGYDPDD NHVGLDVGTV  1140
ASNKTASLAG FNITIATNKT APANYTAWIE YDGAARRIAV YMGVRGAPRP ATPVLASPLD  1200
LSELVPERAY LGFTASTGVS FELNCILDWN LTIETFPADK KSKGWVVPVA VAVPVAAIAA  1260
AAFVVARMAR ARRSMERRRQ ERLEHTLTNL PGMPKEFAFE KLRKATKNFD ERLRLGKGGY  1320
GMVYKGVLPA AAVDDDDGRP AAARGGVGEE CIAKWSINLN SSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-3290170484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539799.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420700.0AK242070.1 Oryza sativa Japonica Group cDNA, clone: J075133L10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649921.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A0E0IEE90.0A0A0E0IEE9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QL600.0A0A0E0QL60_ORYRU; Uncharacterized protein
STRINGORUFI08G22780.20.0(Oryza rufipogon)
STRINGONIVA08G22940.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14