PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539801.1_FGP008

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 117aa MW: 12920.8 Da PI: 10.5273

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539801.1_FGP008	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80.8	1.4e-25	54	101	3	49
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEE CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvve 49 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp +++ KN539801.1_FGP008 54 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPAMLK 101 9**********************9888*************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	6.1E-10	31	50	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.1E-26	40	101	IPR003657	WRKY domain
PROSITE profile	PS50811	24.73	47	100	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-21	50	101	IPR003657	WRKY domain
SMART	SM00774	4.1E-25	52	104	IPR003657	WRKY domain
Pfam	PF03106	7.1E-21	54	101	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MASTHTPPSS QPKPSAAHGP RSAPGSGGEL RKNRVKRTIR VPAISSKIAD IPPDEYSWRK 60 YGQKPIKGSP YPRGYYKCST VRGCPARKHV ERATDDPAML KCQPTTPAID YLAYRKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-17	40	100	2	61	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539801.1_FGP008

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK061266	1e-113	AK061266.1 Oryza sativa Japonica Group cDNA clone:006-212-C10, full insert sequence.
GenBank	AK072938	1e-113	AK072938.1 Oryza sativa Japonica Group cDNA clone:J023149N23, full insert sequence.
GenBank	CT832068	1e-113	CT832068.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103N04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633632.1	6e-44	WRKY transcription factor WRKY51-like
Refseq	XP_015691793.1	5e-44	PREDICTED: probable WRKY transcription factor 17
Swissprot	Q9SV15	3e-42	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A0D3FZV3	1e-42	A0A0D3FZV3_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9ZQA1	1e-42	A0A0D9ZQA1_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H5M0	1e-42	A0A0E0H5M0_ORYNI; HKT12 transporter
TrEMBL	A0A0E0PDQ1	1e-42	A0A0E0PDQ1_ORYRU; HKT12 transporter
TrEMBL	A0A172ZNC1	1e-42	A0A172ZNC1_ORYRU; HKT12 transporter
TrEMBL	A0A172ZND3	1e-42	A0A172ZND3_ORYNI; HKT12 transporter
TrEMBL	A0A172ZNG5	1e-42	A0A172ZNG5_ORYNI; HKT12 transporter
TrEMBL	A0A172ZNG7	1e-42	A0A172ZNG7_ORYNI; HKT12 transporter
TrEMBL	A0A172ZNH3	1e-42	A0A172ZNH3_ORYNI; HKT12 transporter
TrEMBL	A0A172ZNH8	1e-42	A0A172ZNH8_ORYNI; HKT12 transporter
TrEMBL	A0A172ZNI6	1e-42	A0A172ZNI6_ORYNI; HKT12 transporter
TrEMBL	A0A172ZNJ0	1e-42	A0A172ZNJ0_ORYNI; HKT12 transporter
TrEMBL	A0A172ZNK8	1e-42	A0A172ZNK8_ORYSI; HKT12 transporter
TrEMBL	A0A172ZNL2	1e-42	A0A172ZNL2_ORYNI; HKT12 transporter
TrEMBL	A0A172ZNM0	1e-42	A0A172ZNM0_ORYNI; HKT12 transporter
TrEMBL	A0A172ZP19	1e-42	A0A172ZP19_ORYNI; HKT12 transporter
TrEMBL	A0A172ZPJ7	1e-42	A0A172ZPJ7_ORYNI; HKT12 transporter
TrEMBL	B3GAW3	2e-43	B3GAW3_WHEAT; WRKY20 transcription factor (Fragment)
TrEMBL	Q6IEL3	1e-42	Q6IEL3_ORYSI; HKT12 transporter
TrEMBL	Q7XNY3	1e-42	Q7XNY3_ORYSJ; OSJNBb0015N08.8 protein
STRING	OMERI10G14590.1	1e-43	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP617	38	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	1e-44	WRKY DNA-binding protein 11

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]